Transcript: ENST00000527952.1 PTPRJ-003

Description

protein tyrosine phosphatase, receptor type, J [Source:HGNC Symbol;Acc:9673]

Gene Synonyms

CD148, DEP1, HPTPeta, R-PTP-ETA, SCC1

Location

Chromosome 11: 48,002,279-48,145,252 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 58776 variant alleles and maps to 79 oligo probes.

Gene

This transcript is a product of gene ENSG00000149177.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000418331.2	PTPRJ-001	5122	1337aa	ENSP00000400010.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7945	Q12913 Q9NPR5	NM_002843.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440289.2	PTPRJ-002	3158	539aa	ENSP00000409733.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44596	Q12913 Q9NPR5	NM_001098503.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527952.1	PTPRJ-003	626	146aa	ENSP00000435618.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJ83	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534219.1	PTPRJ-006	546	120aa	ENSP00000432686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPH3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526550.1	PTPRJ-004	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527026.1	PTPRJ-005	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 626 bps, Translation length: 146 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000527952.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000390527 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000527952.1 PTPRJ-003

Summary