Transcript: ENST00000278412.2 SSRP1-001

Description

structure specific recognition protein 1 [Source:HGNC Symbol;Acc:11327]

Gene Synonyms

FACT, FACT80, T160

Location

About this transcript

This transcript has 17 exons, is annotated with 23 domains and features, is associated with 4522 variant alleles and maps to 638 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278412.2	SSRP1-001	2819	709aa	ENSP00000278412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7952	E9PMD4 E9PPZ7 Q08945	NM_003146.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526696.1	SSRP1-004	1007	192aa	ENSP00000431154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMD4 E9PPZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000529002.1	SSRP1-003	844	154aa	ENSP00000434546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000293880.5	SSRP1-002	6296	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 2,819 bps, Translation length: 709 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q08945

CCDS

This transcript is a member of the Human CCDS set: CCDS7952

Version

ENST00000278412.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000392460 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.