Transcript: ENST00000380913.3 SHROOM2-001

Description

shroom family member 2 [Source:HGNC Symbol;Acc:630]

Gene Synonyms

APXL, HSAPXL

Location

About this transcript

This transcript has 10 exons, is annotated with 24 domains and features, is associated with 56973 variant alleles and maps to 573 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380913.3	SHROOM2-001	7447	1616aa	ENSP00000370299.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14135	C9IZC6 F5H3B6 Q13796	NM_001649.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418909.2	SHROOM2-201	3597	451aa	ENSP00000415229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZC6 F5H3B6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452575.1	SHROOM2-002	2276	375aa	ENSP00000406724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493668.1	SHROOM2-003	855	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 7,447 bps, Translation length: 1,616 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13796

CCDS

This transcript is a member of the Human CCDS set: CCDS14135

Version

ENST00000380913.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000055721 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.