Transcript: ENST00000319540.4 SCD5-001

Description

stearoyl-CoA desaturase 5 [Source:HGNC Symbol;Acc:21088]

Gene Synonyms

ACOD4, FADS4, FLJ21032, HSCD5, SCD2, SCD4

Location

About this transcript

This transcript has 5 exons, is annotated with 16 domains and features, is associated with 71506 variant alleles and maps to 381 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319540.4	SCD5-001	3101	330aa	ENSP00000316329.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34024	Q86SK9	NM_001037582.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273908.4	SCD5-002	1995	256aa	ENSP00000273908.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3595	Q86SK9	NM_024906.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282709.4	SCD5-201	841	132aa	ENSP00000282709.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BSN4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,101 bps, Translation length: 330 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86SK9

CCDS

This transcript is a member of the Human CCDS set: CCDS34024

Version

ENST00000319540.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252635 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.