Transcript: ENST00000398559.2 TMF1-001

Description

TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:11870]

Gene Synonyms

ARA160, TMF

Location

About this transcript

This transcript has 17 exons, is annotated with 22 domains and features, is associated with 14420 variant alleles and maps to 879 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543976.1	TMF1-201	6886	1096aa	ENSP00000438706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P82094	NM_007114.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398559.2	TMF1-001	6849	1093aa	ENSP00000381567.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43105	P82094	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488010.1	TMF1-002	3399	775aa	ENSP00000419330.1	Nonsense mediated decay		F8WF45	-	-
ENST00000489370.1	TMF1-005	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477872.1	TMF1-004	222	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 6,849 bps, Translation length: 1,093 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P82094

CCDS

This transcript is a member of the Human CCDS set: CCDS43105

Version

ENST00000398559.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000352106 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.