Transcript: ENST00000444040.2 SHQ1-003

Description

SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:25543]

Gene Synonyms

FLJ10539, Shq1p

Location

About this transcript

This transcript has 11 exons, is annotated with 2 domains and features, is associated with 42716 variant alleles and maps to 521 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325599.8	SHQ1-001	2879	577aa	ENSP00000315182.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33788	C9J6N3 Q6PI26	NM_018130.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463369.1	SHQ1-004	2065	549aa	ENSP00000417452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DL05 C9J6N3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482785.1	SHQ1-005	502	110aa	ENSP00000418398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6N3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444040.2	SHQ1-003	2844	50aa	ENSP00000402447.2	Nonsense mediated decay		F8WDZ9	-	-
ENST00000471526.1	SHQ1-006	553	63aa	ENSP00000417739.1	Nonsense mediated decay		F8WBC6	-	-
ENST00000468371.1	SHQ1-002	4024	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475558.1	SHQ1-008	666	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468347.1	SHQ1-007	134	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 2, Transcript length: 2,844 bps, Translation length: 50 residues

Version

ENST00000444040.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352312 (version 1)