Transcript: ENST00000354504.3 VPS54-003

Description

vacuolar protein sorting 54 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18652]

Gene Synonyms

HCC8, SLP-8p, VPS54L, WR, hVps54L

Location

About this transcript

This transcript has 20 exons, is annotated with 6 domains and features, is associated with 38607 variant alleles and maps to 622 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409558.4	VPS54-002	4337	965aa	ENSP00000386980.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46302	Q9P1Q0	NM_016516.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354504.3	VPS54-003	3594	824aa	ENSP00000346499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9P1Q0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000272322.4	VPS54-001	3463	977aa	ENSP00000272322.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33208	Q9P1Q0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416400.1	VPS54-004	1277	81aa	ENSP00000414725.2	Nonsense mediated decay		Q9P1Q0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,594 bps, Translation length: 824 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P1Q0

Version

ENST00000354504.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000327064 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.