Transcript: ENST00000368843.3 SNX27-001

Description

sorting nexin family member 27 [Source:HGNC Symbol;Acc:20073]

Gene Synonyms

KIAA0488, MGC20471, MRT1, MY014

Location

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 36809 variant alleles and maps to 615 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368843.3	SNX27-001	7197	528aa	ENSP00000357836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1001	Q96L92	NM_030918.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458013.2	SNX27-003	6403	541aa	ENSP00000400333.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96L92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368838.1	SNX27-004	1308	435aa	ENSP00000357831.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96L92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368841.2	SNX27-002	7070	65aa	ENSP00000357834.2	Nonsense mediated decay		H7C603	-	-
ENST00000482791.1	SNX27-005	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 7,197 bps, Translation length: 528 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96L92

CCDS

This transcript is a member of the Human CCDS set: CCDS1001

Version

ENST00000368843.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000104568 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.