Transcript: ENST00000271588.4 HMCN1-001

Description

hemicentin 1 [Source:HGNC Symbol;Acc:19194]

Gene Synonyms

ARMD1, FBLN6, FIBL-6, FIBL6

Location

About this transcript

This transcript has 107 exons, is annotated with 377 domains and features, is associated with 196054 variant alleles and maps to 2546 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000271588.4	HMCN1-001	18208	5635aa	ENSP00000271588.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30956	Q96RW7	NM_031935.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367492.2	HMCN1-201	17861	5518aa	ENSP00000356462.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCP6 Q96K89 Q96RW7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414277.1	HMCN1-004	720	240aa	ENSP00000406205.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCP6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000485744.1	HMCN1-003	1884	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493413.1	HMCN1-002	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475585.1	HMCN1-005	389	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 107, Coding exons: 107, Transcript length: 18,208 bps, Translation length: 5,635 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96RW7

CCDS

This transcript is a member of the Human CCDS set: CCDS30956

Version

ENST00000271588.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000131848 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.