Transcript: ENST00000368078.3 CASQ1-001

Description

calsequestrin 1 (fast-twitch, skeletal muscle) [Source:HGNC Symbol;Acc:1512]

Gene Synonyms

CASQ, PDIB1

Location

About this transcript

This transcript has 11 exons, is annotated with 25 domains and features, is associated with 5554 variant alleles and maps to 433 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368079.3	CASQ1-201	1956	390aa	ENSP00000357058.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAC8 P31415	NM_001231.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368078.3	CASQ1-001	1897	396aa	ENSP00000357057.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1198	C9JAC8 P31415	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467691.1	CASQ1-003	595	117aa	ENSP00000418051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAC8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481081.1	CASQ1-002	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,897 bps, Translation length: 396 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31415

CCDS

This transcript is a member of the Human CCDS set: CCDS1198

Version

ENST00000368078.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000077412 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.