Transcript: ENST00000270879.4 FCN3-001

Description

ficolin (collagen/fibrinogen domain containing) 3 [Source:HGNC Symbol;Acc:3625]

Gene Synonyms

FCNH, HAKA1

Location

About this transcript

This transcript has 8 exons, is annotated with 13 domains and features, is associated with 2889 variant alleles and maps to 332 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000270879.4	FCN3-001	1030	299aa	ENSP00000270879.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS300	O75636	NM_003665.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354982.2	FCN3-002	997	288aa	ENSP00000347077.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS301	O75636 Q6UXM4 Q6UY50	NM_173452.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481748.1	FCN3-003	1000	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498393.1	FCN3-004	931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,030 bps, Translation length: 299 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75636

CCDS

This transcript is a member of the Human CCDS set: CCDS300

Version

ENST00000270879.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000015667 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.