Transcript: ENST00000270349.9 SLC6A3-001

Description

solute carrier family 6 (neurotransmitter transporter), member 3 [Source:HGNC Symbol;Acc:11049]

Gene Synonyms

DAT, DAT1, PKDYS

Location

About this transcript

This transcript has 15 exons, is annotated with 33 domains and features, is associated with 26454 variant alleles and maps to 668 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000270349.9	SLC6A3-001	3932	620aa	ENSP00000270349.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3863	H0YBA7 Q01959 Q6LC27	NM_001044.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453492.2	SLC6A3-201	2770	620aa	ENSP00000399806.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3863	H0YBA7 Q01959 Q6LC27	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512002.1	SLC6A3-003	950	81aa	ENSP00000430324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513308.1	SLC6A3-002	879	270aa	ENSP00000429101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBA7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511750.1	SLC6A3-004	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,932 bps, Translation length: 620 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01959

CCDS

This transcript is a member of the Human CCDS set: CCDS3863

Version

ENST00000270349.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253650 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.