Transcript: ENST00000562592.1 KATNB1-003

Description

katanin p80 (WD repeat containing) subunit B 1 [Source:HGNC Symbol;Acc:6217]

Gene Synonyms

KAT

Location

Chromosome 16: 57,769,651-57,785,967 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 24 domains and features, is associated with 6975 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000140854.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379661.3	KATNB1-001	2664	655aa	ENSP00000368982.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10788	H3BPK1 H3BTV8 Q9BVA0	NM_005886.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562592.1	KATNB1-003	853	210aa	ENSP00000455350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPK1 H3BTV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563462.1	KATNB1-008	827	276aa	ENSP00000457334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000566726.1	KATNB1-010	728	208aa	ENSP00000455270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPD8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569627.1	KATNB1-005	622	117aa	ENSP00000457046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BT67 H3BTV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566785.1	KATNB1-004	619	79aa	ENSP00000457347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566611.1	KATNB1-002	3854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563127.1	KATNB1-006	733	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569018.1	KATNB1-009	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562542.1	KATNB1-007	512	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 853 bps, Translation length: 210 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000562592.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000433299 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000562592.1 KATNB1-003

Summary