Transcript: ENST00000557943.1 ETFA-001

Description

electron-transfer-flavoprotein, alpha polypeptide [Source:HGNC Symbol;Acc:3481]

Gene Synonyms

EMA, GA2, MADD

Location

Chromosome 15: 76,507,696-76,603,810 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 40594 variant alleles and maps to 524 oligo probes.

Gene

This transcript is a product of gene ENSG00000140374.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000557943.1	ETFA-001	2287	333aa	ENSP00000452762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32299	H0YL83 P13804	NM_000126.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433983.2	ETFA-002	1346	284aa	ENSP00000399273.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45311	H0YL83 P13804	NM_001127716.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560726.1	ETFA-006	942	73aa	ENSP00000453098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560595.1	ETFA-019	917	303aa	ENSP00000453345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLU7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559386.1	ETFA-011	893	289aa	ENSP00000452777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKF0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559973.1	ETFA-017	804	254aa	ENSP00000454194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559602.1	ETFA-014	792	229aa	ENSP00000452659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK49 H0YL83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560345.1	ETFA-012	717	239aa	ENSP00000453017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000267950.8	ETFA-015	1289	64aa	ENSP00000267950.8	Nonsense mediated decay		J3KN60	-	-
ENST00000560044.1	ETFA-004	1054	45aa	ENSP00000452942.1	Nonsense mediated decay		H0YMU8	-	-
ENST00000560899.1	ETFA-007	910	39aa	ENSP00000453422.1	Nonsense mediated decay		H0YM12	-	-
ENST00000560309.1	ETFA-005	633	45aa	ENSP00000453753.1	Nonsense mediated decay		H0YMU8	-	-
ENST00000565910.1	ETFA-020	609	46aa	ENSP00000458001.1	Nonsense mediated decay		H3BV91	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560816.1	ETFA-010	412	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559075.1	ETFA-003	1735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557975.1	ETFA-018	1086	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559758.1	ETFA-008	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560179.1	ETFA-016	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561092.1	ETFA-013	461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558803.1	ETFA-009	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,287 bps, Translation length: 333 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P13804

CCDS

This transcript is a member of the Human CCDS set: CCDS32299

Version

ENST00000557943.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000419302 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000557943.1 ETFA-001

Summary