Transcript: ENST00000551171.1 RDH12-001

Description

retinol dehydrogenase 12 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:19977]

Gene Synonyms

FLJ30273, LCA13, LCA3, RP53, SDR7C2

Location

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 13632 variant alleles and maps to 342 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000551171.1	RDH12-001	1879	316aa	ENSP00000449079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9787	Q96NR8	NM_152443.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000267502.3	RDH12-201	1833	316aa	ENSP00000267502.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9787	Q96NR8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539142.1	RDH12-202	1723	316aa	ENSP00000438715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9787	Q96NR8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547463.1	RDH12-003	163	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552873.1	RDH12-002	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,879 bps, Translation length: 316 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96NR8

CCDS

This transcript is a member of the Human CCDS set: CCDS9787

Version

ENST00000551171.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406918 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.