Transcript: ENST00000541169.1 VPS33A-009

Description

vacuolar protein sorting 33 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:18179]

Location

Chromosome 12: 122,717,366-122,734,517 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 7898 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000139719.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000267199.4	VPS33A-001	4586	596aa	ENSP00000267199.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9231	Q96AX1 Q9H6C4	NM_022916.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451053.2	VPS33A-002	1154	186aa	ENSP00000442951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6Y0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536212.1	VPS33A-008	567	154aa	ENSP00000439255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2X5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543633.1	VPS33A-003	2019	42aa	ENSP00000442392.1	Nonsense mediated decay		F5H7N5	-	-
ENST00000542310.1	VPS33A-004	756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541169.1	VPS33A-009	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000540669.1	VPS33A-007	455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000544349.1	VPS33A-005	2114	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542790.1	VPS33A-006	1133	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 594 bps,

Version

ENST00000541169.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000401609 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000541169.1 VPS33A-009

Summary