Transcript: ENST00000394023.3 SMARCC2-003

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 [Source:HGNC Symbol;Acc:11105]

Gene Synonyms

BAF170, CRACC2, Rsc8

Location

Chromosome 12: 56,556,767-56,583,351 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 24 domains and features, is associated with 12907 variant alleles and maps to 1015 oligo probes.

Gene

This transcript is a product of gene ENSG00000139613.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394023.3	SMARCC2-003	4271	1152aa	ENSP00000377591.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55835	F8VZW6 Q8TAQ2	NM_001130420.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550164.1	SMARCC2-006	4114	1245aa	ENSP00000449396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXC8 F8VZW6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000267064.4	SMARCC2-001	4076	1214aa	ENSP00000267064.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8907	F8VZW6 Q8TAQ2	NM_003075.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347471.4	SMARCC2-002	3839	1130aa	ENSP00000302919.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8908	F8VZW6 Q8TAQ2	NM_139067.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552674.1	SMARCC2-004	3730	105aa	ENSP00000447680.1	Nonsense mediated decay		F8VZW6	-	-
ENST00000550519.1	SMARCC2-009	789	105aa	ENSP00000449429.1	Nonsense mediated decay		F8VZW6	-	-
ENST00000550859.1	SMARCC2-010	656	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549209.1	SMARCC2-016	439	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550150.1	SMARCC2-005	3244	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548130.1	SMARCC2-014	1238	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549757.1	SMARCC2-011	1062	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547356.1	SMARCC2-007	741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552931.1	SMARCC2-015	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552566.1	SMARCC2-013	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552627.1	SMARCC2-008	409	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 4,271 bps, Translation length: 1,152 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TAQ2

CCDS

This transcript is a member of the Human CCDS set: CCDS55835

Version

ENST00000394023.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408459 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394023.3 SMARCC2-003

Summary