Transcript: ENST00000309522.3 HADH-001

Description

hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:4799]

Gene Synonyms

HAD, HADH1, HADHSC, HCDH, HHF4, MSCHAD, SCHAD

Location

Chromosome 4: 108,910,940-108,956,331 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 10 domains and features, is associated with 18622 variant alleles and maps to 503 oligo probes.

Gene

This transcript is a product of gene ENSG00000138796.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000505878.1	HADH-003	2044	318aa	ENSP00000425952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PF18	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403312.1	HADH-002	2033	390aa	ENSP00000385638.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_001184705.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000603302.1	HADH-202	2032	331aa	ENSP00000474560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54790	Q16836	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309522.3	HADH-001	1912	314aa	ENSP00000312288.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3678	Q16836	NM_005327.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454409.2	HADH-201	1910	318aa	ENSP00000395167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PF18	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511742.1	HADH-004	571	52aa	ENSP00000425254.1	Nonsense mediated decay		J3KR89	-	-
ENST00000510728.1	HADH-006	751	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515462.1	HADH-008	726	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507260.1	HADH-009	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514776.1	HADH-007	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,912 bps, Translation length: 314 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16836

CCDS

This transcript is a member of the Human CCDS set: CCDS3678

Version

ENST00000309522.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254750 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000309522.3 HADH-001

Summary