Transcript: ENST00000486758.1 SHROOM3-004

Description

shroom family member 3 [Source:HGNC Symbol;Acc:30422]

Gene Synonyms

APXL3, KIAA1481, SHRM, SHRML, ShrmL

Location

Chromosome 4: 77,610,724-77,663,283 forward strand.

About this transcript

This transcript has 4 exons, is associated with 21318 variant alleles and maps to 285 oligo probes.

Gene

This transcript is a product of gene ENSG00000138771.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296043.6	SHROOM3-001	11020	1996aa	ENSP00000296043.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3579	Q8TF72	NM_020859.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473602.1	SHROOM3-013	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469923.1	SHROOM3-007	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466541.1	SHROOM3-006	628	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497440.1	SHROOM3-012	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481002.1	SHROOM3-008	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485780.1	SHROOM3-010	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490690.1	SHROOM3-009	504	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484236.1	SHROOM3-011	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486758.1	SHROOM3-004	3766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 3,766 bps,

Version

ENST00000486758.1

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347370 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000486758.1 SHROOM3-004

Summary