Transcript: ENST00000502409.1 PRDM5-009

Description

PR domain containing 5 [Source:HGNC Symbol;Acc:9349]

Gene Synonyms

BCS2, PFM2

Location

Chromosome 4: 121,706,186-121,742,331 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 23 domains and features, is associated with 15616 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000138738.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264808.3	PRDM5-001	5330	630aa	ENSP00000264808.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3716	Q9NQX1	NM_018699.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394435.2	PRDM5-002	2492	111aa	ENSP00000377955.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428209.2	PRDM5-006	2338	599aa	ENSP00000404832.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515109.1	PRDM5-005	2259	501aa	ENSP00000422309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q0VAI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502409.1	PRDM5-009	1044	145aa	ENSP00000424861.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506065.1	PRDM5-011	696	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505033.1	PRDM5-007	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513741.1	PRDM5-012	210	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505484.1	PRDM5-004	2396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512845.1	PRDM5-003	1249	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503661.1	PRDM5-010	847	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507611.1	PRDM5-008	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 1,044 bps, Translation length: 145 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000502409.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363934 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000502409.1 PRDM5-009

Summary