Transcript: ENST00000261854.5 SPPL2A-001

Description

signal peptide peptidase like 2A [Source:HGNC Symbol;Acc:30227]

Gene Synonyms

IMP3, PSL2

Location

Chromosome 15: 50,999,506-51,058,005 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 20 domains and features, is associated with 25575 variant alleles and maps to 530 oligo probes.

Gene

This transcript is a product of gene ENSG00000138600.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261854.5	SPPL2A-001	2329	520aa	ENSP00000261854.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10138	H0YNA7 Q8TCT8	NM_032802.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558934.1	SPPL2A-004	1422	356aa	ENSP00000453927.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558414.1	SPPL2A-003	564	149aa	ENSP00000453932.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNA7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559293.1	SPPL2A-005	419	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559527.1	SPPL2A-007	899	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560288.1	SPPL2A-002	742	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558146.1	SPPL2A-006	328	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,329 bps, Translation length: 520 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TCT8

CCDS

This transcript is a member of the Human CCDS set: CCDS10138

Version

ENST00000261854.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254543 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000261854.5 SPPL2A-001

Summary