Description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:HGNC Symbol;Acc:11102]
Gene Synonyms
HARP, HHARP
Location
Chromosome 2: 217,277,137-217,279,864 forward strand.
About this transcript
This transcript has 3 exons, is annotated with 2 domains and features, is associated with 1281 variant alleles and maps to 142 oligo probes.
Gene
This transcript is a product of gene ENSG00000138375.8 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000357276.4 | SMARCAL1-001 | 3271 | 954aa | ENSP00000349823.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2403 | C9J6I8 C9J8F8 C9JHQ1 C9JP32 Q9NZC9 | NM_014140.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000358207.5 | SMARCAL1-003 | 3056 | 954aa | ENSP00000350940.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2403 | C9J6I8 C9J8F8 C9JHQ1 C9JP32 Q9NZC9 | NM_001127207.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000392128.2 | SMARCAL1-002 | 2431 | 796aa | ENSP00000375974.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JHQ1 H7BYI2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000427645.1 | SMARCAL1-010 | 977 | 325aa | ENSP00000392997.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C051 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000430374.1 | SMARCAL1-004 | 722 | 145aa | ENSP00000405077.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6I8 C9J8F8 C9JP32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444508.1 | SMARCAL1-006 | 711 | 130aa | ENSP00000398969.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8F8 C9JP32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000434435.1 | SMARCAL1-007 | 544 | 92aa | ENSP00000402967.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JP32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000412913.1 | SMARCAL1-009 | 538 | 141aa | ENSP00000390248.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JHQ1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000445153.1 | SMARCAL1-012 | 484 | 161aa | ENSP00000400473.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000425815.1 | SMARCAL1-005 | 310 | 19aa | ENSP00000394410.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000479008.1 | SMARCAL1-011 | 633 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000486983.1 | SMARCAL1-013 | 793 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496037.1 | SMARCAL1-008 | 542 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |