Transcript: ENST00000260665.7 LRPPRC-001

Description

leucine-rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:15714]

Gene Synonyms

CLONE-23970, GP130, LRP130, LSFC

Location

Chromosome 2: 44,113,647-44,223,144 reverse strand.

About this transcript

This transcript has 38 exons, is annotated with 30 domains and features, is associated with 60487 variant alleles and maps to 1240 oligo probes.

Gene

This transcript is a product of gene ENSG00000138095.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000260665.7	LRPPRC-001	6335	1394aa	ENSP00000260665.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33189	E5KNY5 P42704	NM_133259.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409946.1	LRPPRC-002	1848	531aa	ENSP00000386234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P42704	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409659.1	LRPPRC-005	1610	504aa	ENSP00000386562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ38	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447246.1	LRPPRC-003	1209	359aa	ENSP00000403637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCA9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419884.1	LRPPRC-009	888	77aa	ENSP00000414207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3W8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463456.1	LRPPRC-006	3549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472420.1	LRPPRC-010	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483489.1	LRPPRC-008	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467058.1	LRPPRC-007	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 38, Transcript length: 6,335 bps, Translation length: 1,394 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P42704

CCDS

This transcript is a member of the Human CCDS set: CCDS33189

Version

ENST00000260665.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000327823 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000260665.7 LRPPRC-001

Summary