Transcript: ENST00000378727.4 THUMPD2-002

Description

THUMP domain containing 2 [Source:HGNC Symbol;Acc:14890]

Gene Synonyms

C2orf8, MGC2454

Location

Chromosome 2: 39,963,447-40,006,407 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 6 domains and features, is associated with 20806 variant alleles and maps to 552 oligo probes.

Gene

This transcript is a product of gene ENSG00000138050.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000505747.1	THUMPD2-001	1970	503aa	ENSP00000423933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1805	D6W593 Q9BTF0	NM_025264.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000260619.6	THUMPD2-201	1422	473aa	ENSP00000260619.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BTF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454352.2	THUMPD2-202	996	290aa	ENSP00000392122.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378727.4	THUMPD2-002	2089	303aa	ENSP00000368001.4	Nonsense mediated decay		Q9BTF0	-	-
ENST00000530522.1	THUMPD2-005	1561	88aa	ENSP00000434844.1	Nonsense mediated decay		H0YE26	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510781.2	THUMPD2-006	996	291aa	ENSP00000426202.2	Nonsense mediated decay		E7EUG5 H7C5V1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000403537.3	THUMPD2-003	961	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531687.1	THUMPD2-007	230	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460072.1	THUMPD2-004	3148	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530095.1	THUMPD2-009	662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527689.1	THUMPD2-008	210	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 7, Transcript length: 2,089 bps, Translation length: 303 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BTF0

Version

ENST00000378727.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219992 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000378727.4 THUMPD2-002

Summary