Transcript: ENST00000401473.3 HMGA1-002

Description

high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:5010]

Gene Synonyms

HMG-R, HMGA1A, HMGIY

Location

Chromosome 6: 34,204,650-34,214,008 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 5765 variant alleles and maps to 683 oligo probes.

Gene

This transcript is a product of gene ENSG00000137309.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000447654.1	HMGA1-203	2159	107aa	ENSP00000399888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4789	P17096	NM_145902.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000311487.5	HMGA1-004	1920	107aa	ENSP00000308227.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4789	P17096	NM_145899.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401473.3	HMGA1-002	1887	96aa	ENSP00000385693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_002131.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374116.3	HMGA1-201	1848	96aa	ENSP00000363230.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_145905.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347617.6	HMGA1-001	1773	96aa	ENSP00000288245.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_145903.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395004.3	HMGA1-202	1726	328aa	ENSP00000378452.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYM6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478214.1	HMGA1-003	716	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 1,887 bps, Translation length: 96 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17096

CCDS

This transcript is a member of the Human CCDS set: CCDS4788

Version

ENST00000401473.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040215 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000401473.3 HMGA1-002

Summary