Transcript: ENST00000372447.3 C9orf78-007

Description

chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]

Gene Synonyms

HCA59, HSPC220, bA409K20.3

Location

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 4073 variant alleles and maps to 406 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372447.3	C9orf78-007	1795	289aa	ENSP00000361524.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6931	Q9NZ63	NM_016520.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461762.1	C9orf78-002	2390	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480023.1	C9orf78-001	2143	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461349.1	C9orf78-006	783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461539.1	C9orf78-004	637	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492991.1	C9orf78-005	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495934.2	C9orf78-003	472	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,795 bps, Translation length: 289 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZ63

CCDS

This transcript is a member of the Human CCDS set: CCDS6931

Version

ENST00000372447.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054625 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.