Transcript: ENST00000409836.3 GYPC-002

Description

glycophorin C (Gerbich blood group) [Source:HGNC Symbol;Acc:4704]

Gene Synonyms

CD236, CD236R, GE, GLPC, GPC, GPD, GYPD, Ge, PAS-2, PAS-2'

Location

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 20210 variant alleles and maps to 290 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000259254.4	GYPC-001	1246	128aa	ENSP00000259254.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2136	A8D444 P04921	NM_002101.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356887.7	GYPC-201	1072	107aa	ENSP00000349354.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58724	A8D444 P04921	NM_001256584.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409836.3	GYPC-002	932	109aa	ENSP00000386904.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46402	A8D444 P04921	NM_016815.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464053.1	GYPC-003	1805	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484700.1	GYPC-004	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459787.1	GYPC-005	758	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 932 bps, Translation length: 109 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04921

CCDS

This transcript is a member of the Human CCDS set: CCDS46402

Version

ENST00000409836.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000330925 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.