Transcript: ENST00000553148.1 SCYL2-007

Description

SCY1-like 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:19286]

Gene Synonyms

CVAK104, KIAA1360

Location

Chromosome 12: 100,711,493-100,717,614 forward strand.

About this transcript

This transcript has 2 exons, is associated with 2806 variant alleles and maps to 73 oligo probes.

Gene

This transcript is a product of gene ENSG00000136021.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360820.2	SCYL2-001	5779	929aa	ENSP00000354061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9076	F8VPW3 F8VSC5 Q6P3W7	NM_017988.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549687.1	SCYL2-002	2328	681aa	ENSP00000448366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPW3 F8VSC5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548392.1	SCYL2-004	790	76aa	ENSP00000450294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550251.1	SCYL2-008	502	115aa	ENSP00000449567.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548871.1	SCYL2-009	429	60aa	ENSP00000448400.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550067.1	SCYL2-006	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547202.1	SCYL2-011	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547735.1	SCYL2-010	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553148.1	SCYL2-007	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549486.1	SCYL2-005	503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 523 bps,

Version

ENST00000553148.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408496 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000553148.1 SCYL2-007

Summary