Transcript: ENST00000546500.1 HNRNPA1-001

Description

heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031]

Gene Synonyms

ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, hnRNP A1, hnRNP-A1, hnRNPA1

Location

Chromosome 12: 54,673,977-54,680,871 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 16 domains and features, is associated with 4106 variant alleles and maps to 1708 oligo probes.

Gene

This transcript is a product of gene ENSG00000135486.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000546500.1	HNRNPA1-001	4121	320aa	ENSP00000448617.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41793	F8VYN5 H0YH80 P09651 Q3MI39 Q9BSM5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340913.6	HNRNPA1-002	1842	372aa	ENSP00000341826.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44909	F8VYN5 P09651	NM_031157.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547276.1	HNRNPA1-012	1539	267aa	ENSP00000447260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VYN5 P09651	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330752.8	HNRNPA1-023	1294	307aa	ENSP00000333504.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VYN5 F8W6I7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550482.1	HNRNPA1-018	832	191aa	ENSP00000446486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YH80 Q3MI39	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548688.1	HNRNPA1-013	711	231aa	ENSP00000447782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VYN5 F8VZ49	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550994.1	HNRNPA1-014	569	113aa	ENSP00000448917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VYN5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547708.1	HNRNPA1-015	530	156aa	ENSP00000448229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W646	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551702.1	HNRNPA1-019	481	145aa	ENSP00000448117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VTQ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547566.1	HNRNPA1-006	1234	320aa	ENSP00000449913.1	Nonsense mediated decay	CCDS41793	F8VYN5 H0YH80 P09651 Q3MI39 Q9BSM5	-	-
ENST00000551803.1	HNRNPA1-022	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551665.1	HNRNPA1-021	925	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547870.1	HNRNPA1-016	920	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551679.1	HNRNPA1-020	359	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 4,121 bps, Translation length: 320 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09651

CCDS

This transcript is a member of the Human CCDS set: CCDS41793

Version

ENST00000546500.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000405474 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000546500.1 HNRNPA1-001

Summary