Transcript: ENST00000547301.1 RDH5-006

Description

retinol dehydrogenase 5 (11-cis/9-cis) [Source:HGNC Symbol;Acc:9940]

Gene Synonyms

9cRDH, HSD17B9, RDH1, SDR9C5

Location

Chromosome 12: 56,114,273-56,115,612 forward strand.

About this transcript

This transcript has 2 exons, is associated with 737 variant alleles and maps to 160 oligo probes.

Gene

This transcript is a product of gene ENSG00000135437.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257895.5	RDH5-001	1269	318aa	ENSP00000257895.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31829	B4DDS2 F8VUB9 F8VVC7 Q92781	NM_002905.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548082.1	RDH5-002	1259	318aa	ENSP00000447128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31829	B4DDS2 F8VUB9 F8VVC7 Q92781	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547072.1	RDH5-008	1054	221aa	ENSP00000449927.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VUB9 F8VVC7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552930.1	RDH5-010	527	55aa	ENSP00000448014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VUB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548123.1	RDH5-007	581	103aa	ENSP00000447513.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553160.1	RDH5-005	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550608.1	RDH5-003	1419	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551444.1	RDH5-011	976	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548486.1	RDH5-004	971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553187.1	RDH5-009	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547301.1	RDH5-006	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 558 bps,

Version

ENST00000547301.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000407522 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000547301.1 RDH5-006

Summary