Transcript: ENST00000484147.1 PTPN22-003

Description

protein tyrosine phosphatase, non-receptor type 22 (lymphoid) [Source:HGNC Symbol;Acc:9652]

Gene Synonyms

LYP, LYP1, LYP2, Lyp, Lyp1, Lyp2, PEP, PTPN8

Location

Chromosome 1: 114,375,569-114,414,286 reverse strand.

About this transcript

This transcript has 16 exons, is associated with 15917 variant alleles and maps to 477 oligo probes.

Gene

This transcript is a product of gene ENSG00000134242.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359785.5	PTPN22-001	3654	807aa	ENSP00000352833.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS863	F5H2S8	NM_015967.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528414.1	PTPN22-004	3424	752aa	ENSP00000435176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS864	E9PLD8	NM_012411.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420377.2	PTPN22-006	2726	795aa	ENSP00000388229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMT0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538253.1	PTPN22-201	2414	563aa	ENSP00000439372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2S8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525799.1	PTPN22-007	2118	668aa	ENSP00000432674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460620.1	PTPN22-002	1794	179aa	ENSP00000433141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y2R2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532224.1	PTPN22-008	2421	135aa	ENSP00000431249.1	Nonsense mediated decay		E9PM87	-	-
ENST00000529045.1	PTPN22-010	527	92aa	ENSP00000434932.1	Nonsense mediated decay		E9PMK2	-	-
ENST00000534519.1	PTPN22-009	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484147.1	PTPN22-003	2258	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469077.1	PTPN22-005	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 0, Transcript length: 2,258 bps,

Version

ENST00000484147.1

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000033017 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000484147.1 PTPN22-003

Summary