Transcript: ENST00000495510.1 SPG20-003

Description

spastic paraplegia 20 (Troyer syndrome) [Source:HGNC Symbol;Acc:18514]

Gene Synonyms

KIAA0610, SPARTIN, TAHCCP1

Location

Chromosome 13: 36,900,060-36,920,420 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 8646 variant alleles and maps to 346 oligo probes.

Gene

This transcript is a product of gene ENSG00000133104.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000451493.1	SPG20-202	4944	666aa	ENSP00000414147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_001142295.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355182.4	SPG20-201	4820	666aa	ENSP00000347314.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_001142294.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438666.2	SPG20-002	4789	666aa	ENSP00000406061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_015087.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494062.2	SPG20-010	3018	666aa	ENSP00000473599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_001142296.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495510.1	SPG20-003	2001	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494703.1	SPG20-011	796	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475603.1	SPG20-008	675	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491805.1	SPG20-006	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482146.1	SPG20-007	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460126.1	SPG20-005	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476377.1	SPG20-009	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,001 bps,

Version

ENST00000495510.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044495 (version 2)

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Transcript: ENST00000495510.1 SPG20-003

Summary