Transcript: ENST00000513152.1 PRKAA1-007

Description

protein kinase, AMP-activated, alpha 1 catalytic subunit [Source:HGNC Symbol;Acc:9376]

Gene Synonyms

AMPK, AMPK1, AMPKa1

Location

Chromosome 5: 40,764,344-40,764,890 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 275 variant alleles and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSG00000132356.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354209.3	PRKAA1-001	1918	574aa	ENSP00000346148.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3933	Q13131	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397128.2	PRKAA1-002	5088	559aa	ENSP00000380317.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3932	Q13131	NM_206907.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000296800.4	PRKAA1-003	1134	207aa	ENSP00000296800.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96E92	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000506652.1	PRKAA1-005	1082	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505783.1	PRKAA1-006	919	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509874.1	PRKAA1-004	692	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511248.1	PRKAA1-010	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513152.1	PRKAA1-007	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000397006.2	PRKAA1-009	425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 436 bps,

Version

ENST00000513152.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000368335 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000513152.1 PRKAA1-007

Summary