Transcript: ENST00000559335.1 LHX1-005

Description

LIM homeobox 1 [Source:HGNC Symbol;Acc:6593]

Gene Synonyms

LIM-1, LIM1

Location

About this transcript

This transcript has 2 exons, is associated with 648 variant alleles and maps to 118 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254457.5	LHX1-001	4121	406aa	ENSP00000254457.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11316	P48742 Q58F18	NM_005568.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559335.1	LHX1-005	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589584.1	LHX1-004	512	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557970.1	LHX1-002	1840	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559572.1	LHX1-003	1364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 567 bps,

Version

ENST00000559335.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415610 (version 1)