Transcript: ENST00000588258.1 C19orf40-001

Description

chromosome 19 open reading frame 40 [Source:HGNC Symbol;Acc:28467]

Gene Synonyms

FAAP24, FLJ46828, MGC32020

Location

Chromosome 19: 33,463,156-33,469,128 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 3072 variant alleles and maps to 269 oligo probes.

Gene

This transcript is a product of gene ENSG00000131944.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000588258.1	C19orf40-001	2298	215aa	ENSP00000466121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12426	K7EKQ4 Q9BTP7	NM_152266.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590281.1	C19orf40-005	865	215aa	ENSP00000468475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12426	K7EKQ4 Q9BTP7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589646.1	C19orf40-004	836	120aa	ENSP00000465569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKQ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590179.1	C19orf40-003	784	120aa	ENSP00000465728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKQ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000254262.5	C19orf40-002	875	69aa	ENSP00000254262.5	Nonsense mediated decay		-	-	-
ENST00000591791.1	C19orf40-006	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,298 bps, Translation length: 215 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BTP7

CCDS

This transcript is a member of the Human CCDS set: CCDS12426

Version

ENST00000588258.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000450823 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000588258.1 C19orf40-001

Summary