Transcript: ENST00000460696.1 NPHP4-010

Description

nephronophthisis 4 [Source:HGNC Symbol;Acc:19104]

Gene Synonyms

KIAA0673, POC10, SLSN4

Location

Chromosome 1: 5,922,871-5,927,712 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2703 variant alleles and maps to 401 oligo probes.

Gene

This transcript is a product of gene ENSG00000131697.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378156.4	NPHP4-001	4994	1426aa	ENSP00000367398.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44052	O75161	NM_015102.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489180.2	NPHP4-002	5548	911aa	ENSP00000423747.1	Nonsense mediated decay		Q8IWC0	-	-
ENST00000378169.3	NPHP4-011	4213	262aa	ENSP00000367411.3	Nonsense mediated decay		D6RA06	-	-
ENST00000466897.1	NPHP4-005	1192	138aa	ENSP00000425745.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478423.2	NPHP4-009	4467	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000378161.1	NPHP4-004	4370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460696.1	NPHP4-010	3967	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470763.1	NPHP4-003	3156	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468253.1	NPHP4-008	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506941.1	NPHP4-012	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 3,967 bps,

Version

ENST00000460696.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000099310 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000460696.1 NPHP4-010

Summary