Transcript: ENST00000485984.1 ARHGEF16-004

Description

Rho guanine nucleotide exchange factor (GEF) 16 [Source:HGNC Symbol;Acc:15515]

Gene Synonyms

EPHEXIN4, GEF16, NBR

Location

Chromosome 1: 3,389,333-3,397,677 forward strand.

About this transcript

This transcript has 8 exons, is associated with 4799 variant alleles and maps to 477 oligo probes.

Gene

This transcript is a product of gene ENSG00000130762.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378378.4	ARHGEF16-001	3061	709aa	ENSP00000367629.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46	B0QZD3 Q5VV41	NM_014448.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378371.2	ARHGEF16-003	2219	421aa	ENSP00000367622.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD3 Q5VV41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378373.1	ARHGEF16-002	2211	421aa	ENSP00000367624.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD3 Q5VV41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413250.2	ARHGEF16-201	1504	413aa	ENSP00000408887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD4 B4DJM7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445297.1	ARHGEF16-005	836	146aa	ENSP00000411936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418137.1	ARHGEF16-007	576	180aa	ENSP00000390853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485984.1	ARHGEF16-004	2340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464620.1	ARHGEF16-006	1403	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 2,340 bps,

Version

ENST00000485984.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000001518 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000485984.1 ARHGEF16-004

Summary