Transcript: ENST00000436129.2 TAF4-009

Description

TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa [Source:HGNC Symbol;Acc:11537]

Gene Synonyms

TAF2C, TAF2C1, TAF4A, TAFII130, TAFII135

Location

Chromosome 20: 60,550,413-60,583,243 reverse strand.

About this transcript

This transcript has 11 exons, is associated with 17732 variant alleles and maps to 496 oligo probes.

Gene

This transcript is a product of gene ENSG00000130699.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252996.4	TAF4-001	4628	1085aa	ENSP00000252996.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33500	O00268	NM_003185.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488539.1	TAF4-004	645	215aa	ENSP00000476294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000474089.1	TAF4-006	532	79aa	ENSP00000476270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000609045.1	TAF4-011	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000608887.1	TAF4-010	284	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000609041.1	TAF4-008	2487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000436129.2	TAF4-009	2440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000608458.1	TAF4-007	2147	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486599.1	TAF4-003	412	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 2,440 bps,

Version

ENST00000436129.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000472622 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000436129.2 TAF4-009

Summary