Transcript: ENST00000427978.2 TRPM4-006

Description

transient receptor potential cation channel, subfamily M, member 4 [Source:HGNC Symbol;Acc:17993]

Gene Synonyms

FLJ20041, LTRPC4, PFHB1B, TRPM4B

Location

Chromosome 19: 49,661,072-49,714,937 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 17 domains and features, is associated with 28202 variant alleles and maps to 590 oligo probes.

Gene

This transcript is a product of gene ENSG00000130529.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252826.5	TRPM4-001	4109	1214aa	ENSP00000252826.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33073	Q8TD43	NM_017636.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427978.2	TRPM4-006	3444	1069aa	ENSP00000407492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56098	Q8TD43	NM_001195227.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355712.5	TRPM4-201	3273	860aa	ENSP00000347944.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DIX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000597316.1	TRPM4-013	780	51aa	ENSP00000471236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598691.1	TRPM4-009	594	156aa	ENSP00000473231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R3H6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000595519.1	TRPM4-003	3702	77aa	ENSP00000469893.1	Nonsense mediated decay		M0QYK7	-	-
ENST00000598502.1	TRPM4-005	3695	216aa	ENSP00000470229.1	Nonsense mediated decay		M0QZ19	-	-
ENST00000598697.1	TRPM4-004	3349	103aa	ENSP00000468989.1	Nonsense mediated decay		M0QX92	-	-
ENST00000601347.1	TRPM4-011	642	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596338.1	TRPM4-007	3993	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595071.1	TRPM4-008	2947	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000599628.1	TRPM4-002	1829	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595882.1	TRPM4-012	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000599459.1	TRPM4-014	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594568.1	TRPM4-010	532	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 3,444 bps, Translation length: 1,069 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TD43

CCDS

This transcript is a member of the Human CCDS set: CCDS56098

Version

ENST00000427978.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000465654 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000427978.2 TRPM4-006

Summary