Transcript: ENST00000392095.4 ERMARD-008

Description

ER membrane-associated RNA degradation [Source:HGNC Symbol;Acc:21056]

Gene Synonyms

C6orf70, FLJ11152, PVNH6, dJ266L20.3

Location

Chromosome 6: 170,151,721-170,181,616 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 6 domains and features, is associated with 13461 variant alleles and maps to 625 oligo probes.

Gene

This transcript is a product of gene ENSG00000130023.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000588451.1	ERMARD-007	2146	542aa	ENSP00000468240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EME8 K7EMW5 K7ERF7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366773.3	ERMARD-001	2141	678aa	ENSP00000355735.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34576	F8WAF1 K7EME8 K7EMW5 Q5T6L9	NM_018341.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366772.2	ERMARD-002	2003	631aa	ENSP00000355734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64572	K7EME8 K7EMW5 Q5T6L9	NM_001278531.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392095.4	ERMARD-008	1908	552aa	ENSP00000375945.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64574	F8WAF1 K7EME8 K7EMW5	NM_001278532.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418781.3	ERMARD-006	1841	605aa	ENSP00000397661.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64573	K7EME8 K7EMW5 Q5T6L9	NM_001278533.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590711.1	ERMARD-010	556	74aa	ENSP00000466474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EME8 K7EMW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592745.1	ERMARD-011	552	28aa	ENSP00000466679.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EMW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592367.1	ERMARD-009	551	18aa	ENSP00000468722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588437.1	ERMARD-013	547	5aa	ENSP00000467665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586341.1	ERMARD-016	543	174aa	ENSP00000468124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER62	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592315.1	ERMARD-012	552	73aa	ENSP00000467582.1	Nonsense mediated decay		K7EPX8	-	-
ENST00000590017.1	ERMARD-015	504	46aa	ENSP00000466335.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000366771.1	ERMARD-003	2206	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477995.1	ERMARD-005	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492738.1	ERMARD-004	658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592580.1	ERMARD-014	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 1,908 bps, Translation length: 552 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS64574

Version

ENST00000392095.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000451449 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000392095.4 ERMARD-008

Summary