Transcript: ENST00000575709.1 USP6-003

Description

ubiquitin specific peptidase 6 (Tre-2 oncogene) [Source:HGNC Symbol;Acc:12629]

Gene Synonyms

HRP1, NY-REN-60, TRE17, TRE2, Tre-2, Tre2, USP10, USP6-short

Location

Chromosome 17: 5,031,687-5,078,327 forward strand.

About this transcript

This transcript has 31 exons, is annotated with 8 domains and features, is associated with 20385 variant alleles and maps to 2050 oligo probes.

Gene

This transcript is a product of gene ENSG00000129204.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000574788.1	USP6-002	8464	1406aa	ENSP00000460380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11069	P35125 Q6U210	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000332776.4	USP6-202	8351	786aa	ENSP00000328010.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P35125 Q6U210	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304328.5	USP6-201	8182	1089aa	ENSP00000305473.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P35125	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000250066.6	USP6-001	7976	1406aa	ENSP00000250066.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11069	P35125 Q6U210	NM_004505.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575709.1	USP6-003	8185	376aa	ENSP00000461817.1	Nonsense mediated decay		Q15635 Q6U210	-	-
ENST00000572949.1	USP6-005	7862	786aa	ENSP00000461581.1	Nonsense mediated decay		P35125 Q6U210	-	-
ENST00000572429.1	USP6-006	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000357482.5	USP6-004	1947	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 13, Transcript length: 8,185 bps, Translation length: 376 residues

Version

ENST00000575709.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438991 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000575709.1 USP6-003

Summary