Transcript: ENST00000395898.3 VPS13C-004

Description

vacuolar protein sorting 13 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23594]

Gene Synonyms

FLJ10381, FLJ20136, KIAA1421

Location

Chromosome 15: 62,159,943-62,352,647 reverse strand.

About this transcript

This transcript has 80 exons, is annotated with 18 domains and features, is associated with 92644 variant alleles and maps to 1561 oligo probes.

Gene

This transcript is a product of gene ENSG00000129003.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261517.5	VPS13C-002	13400	3753aa	ENSP00000261517.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32257	B3KW10 B4E2S9 Q709C8	NM_020821.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000249837.3	VPS13C-001	13300	3710aa	ENSP00000249837.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10180	B3KW10 B4E2S9 Q709C8	NM_017684.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395896.4	VPS13C-003	11923	3628aa	ENSP00000379233.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45272	Q709C8	NM_001018088.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395898.3	VPS13C-004	11012	3585aa	ENSP00000379235.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58367	Q709C8	NM_018080.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558919.1	VPS13C-010	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558088.1	VPS13C-008	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560637.1	VPS13C-005	3684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558338.1	VPS13C-006	1863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559119.1	VPS13C-009	738	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561258.1	VPS13C-007	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 80, Coding exons: 80, Transcript length: 11,012 bps, Translation length: 3,585 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q709C8

CCDS

This transcript is a member of the Human CCDS set: CCDS58367

Version

ENST00000395898.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000416001 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000395898.3 VPS13C-004

Summary