Transcript: ENST00000477535.1 IRF5-005

Description

interferon regulatory factor 5 [Source:HGNC Symbol;Acc:6120]

Gene Synonyms

SLEB10

Location

Chromosome 7: 128,577,994-128,588,886 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 5221 variant alleles and maps to 266 oligo probes.

Gene

This transcript is a product of gene ENSG00000128604.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402030.2	IRF5-001	2786	498aa	ENSP00000385352.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5808	C9J7M2 C9JB67 C9JYP7 I6ZU14 Q13568 Q64GB0	NM_001098630.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000249375.4	IRF5-201	2749	498aa	ENSP00000249375.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5808	C9J7M2 C9JB67 C9JYP7 I6ZU14 Q13568 Q64GB0	NM_032643.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473745.1	IRF5-009	2282	498aa	ENSP00000419149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5808	C9J7M2 C9JB67 C9JYP7 I6ZU14 Q13568 Q64GB0	NM_001098627.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357234.5	IRF5-002	1680	514aa	ENSP00000349770.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43645	C9J7M2 C9JB67 C9JYP7 I6ZU14 Q13568	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477535.1	IRF5-005	1374	412aa	ENSP00000419950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56512	C9J7M2 C9JB67 C9JYP7 I6ZU14 Q13568	NM_001242452.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489702.1	IRF5-003	689	151aa	ENSP00000418037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7M2 C9JAU6 C9JB67 C9JYP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479582.1	IRF5-008	637	141aa	ENSP00000417770.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7M2 C9JB67 C9JYP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000467002.1	IRF5-011	560	59aa	ENSP00000417454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JB67	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464557.1	IRF5-010	553	106aa	ENSP00000419056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JB67 C9JYP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465603.1	IRF5-007	2088	147aa	ENSP00000418534.1	Nonsense mediated decay		C9JB67 C9JYP7 Q13568	-	-
ENST00000473787.1	IRF5-012	587	104aa	ENSP00000420274.1	Nonsense mediated decay		C9JB67 F8WDH6	-	-
ENST00000461416.1	IRF5-006	1057	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488569.1	IRF5-004	923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,374 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13568

CCDS

This transcript is a member of the Human CCDS set: CCDS56512

Version

ENST00000477535.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000350938 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000477535.1 IRF5-005

Summary