Transcript: ENST00000392088.2 TUBA4A-002

Description

tubulin, alpha 4a [Source:HGNC Symbol;Acc:12407]

Gene Synonyms

FLJ30169, H2-ALPHA, TUBA1

Location

Chromosome 2: 220,114,433-220,119,330 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 34 domains and features, is associated with 2688 variant alleles and maps to 408 oligo probes.

Gene

This transcript is a product of gene ENSG00000127824.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392088.2	TUBA4A-002	2499	433aa	ENSP00000375938.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63131	A8MUB1 C9JDS9 C9JEV8 C9JQ00	NM_001278552.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000248437.4	TUBA4A-001	2162	448aa	ENSP00000248437.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2438	A8MUB1 C9JDS9 C9JEV8 C9JQ00 P68366	NM_006000.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427737.1	TUBA4A-010	940	180aa	ENSP00000408194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEV8 C9JQ00	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456818.1	TUBA4A-004	673	198aa	ENSP00000416992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEV8 C9JJQ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447205.1	TUBA4A-003	648	153aa	ENSP00000396061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000398989.2	TUBA4A-011	615	156aa	ENSP00000396212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDS9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425551.1	TUBA4A-009	565	119aa	ENSP00000404740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDL2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000498660.1	TUBA4A-006	790	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462806.1	TUBA4A-007	804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475683.1	TUBA4A-005	753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,499 bps, Translation length: 433 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS63131

Version

ENST00000392088.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000259055 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000392088.2 TUBA4A-002

Summary