Transcript: ENST00000375379.3 KDM5C-006

Description

lysine (K)-specific demethylase 5C [Source:HGNC Symbol;Acc:11114]

Gene Synonyms

DXS1272E, JARID1C, MRXJ, MRXSCJ, MRXSJ, SMCX, XE169

Location

Chromosome X: 53,222,111-53,254,604 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 42 domains and features, is associated with 13228 variant alleles and maps to 545 oligo probes.

Gene

This transcript is a product of gene ENSG00000126012.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000452825.3	KDM5C-201	6096	1379aa	ENSP00000445176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55417	P41229	NM_001146702.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375401.3	KDM5C-005	6031	1560aa	ENSP00000364550.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14351	P41229	NM_004187.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404049.3	KDM5C-009	5677	1559aa	ENSP00000385394.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65269	P41229	NM_001282622.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375379.3	KDM5C-006	5245	1557aa	ENSP00000364528.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P41229	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375383.3	KDM5C-007	5122	1516aa	ENSP00000364532.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P41229	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429877.1	KDM5C-012	870	53aa	ENSP00000409757.1	Nonsense mediated decay		F8WDK1	-	-
ENST00000428012.1	KDM5C-013	766	99aa	ENSP00000407277.1	Nonsense mediated decay		F8WF56	-	-
ENST00000349663.6	KDM5C-011	548	74aa	ENSP00000344004.6	Nonsense mediated decay		F8W7H7	-	-
ENST00000465402.1	KDM5C-004	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495519.1	KDM5C-002	600	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467093.1	KDM5C-003	446	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477109.1	KDM5C-001	297	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497100.1	KDM5C-008	1403	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481369.1	KDM5C-010	1361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497995.1	KDM5C-014	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 5,245 bps, Translation length: 1,557 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41229

Version

ENST00000375379.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000056738 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000375379.3 KDM5C-006

Summary