Transcript: ENST00000377805.3 BANF2-001

Description

barrier to autointegration factor 2 [Source:HGNC Symbol;Acc:16172]

Gene Synonyms

BAF-L, BAF2, BAFL, C20orf179, dJ803K15.1

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 15443 variant alleles and maps to 190 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000427254.1	BANF2-003	623	42aa	ENSP00000398738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AM15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000246090.5	BANF2-002	595	90aa	ENSP00000246090.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13129	B1AM15 Q9H503	NM_178477.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377805.3	BANF2-001	444	90aa	ENSP00000367036.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13129	B1AM15 Q9H503	NM_001014977.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545418.2	BANF2-005	360	97aa	ENSP00000439128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54449	B1AM15 Q9H503	NM_001159495.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467330.1	BANF2-004	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 444 bps, Translation length: 90 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H503

CCDS

This transcript is a member of the Human CCDS set: CCDS13129

Version

ENST00000377805.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000102260 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.