Transcript: ENST00000371120.3 ATG4C-002

Description

autophagy related 4C, cysteine peptidase [Source:HGNC Symbol;Acc:16040]

Gene Synonyms

APG4-C, APG4C, AUTL1, AUTL3, FLJ14867

Location

About this transcript

This transcript has 11 exons, is annotated with 5 domains and features, is associated with 31672 variant alleles and maps to 467 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000317868.4	ATG4C-001	2938	458aa	ENSP00000322159.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS623	A6NGQ4 C9JC51 Q96DT6	NM_032852.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371120.3	ATG4C-002	2890	458aa	ENSP00000360161.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS623	A6NGQ4 C9JC51 Q96DT6	NM_178221.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371118.1	ATG4C-004	665	189aa	ENSP00000360159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NGQ4 C9JC51	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443289.1	ATG4C-003	603	151aa	ENSP00000396614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JC51	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414558.2	ATG4C-005	464	110aa	ENSP00000391820.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,890 bps, Translation length: 458 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96DT6

CCDS

This transcript is a member of the Human CCDS set: CCDS623

Version

ENST00000371120.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000025333 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.