Transcript: ENST00000583948.1 NUP85-015

Description

nucleoporin 85kDa [Source:HGNC Symbol;Acc:8734]

Gene Synonyms

FLJ12549, NUP75, Nup75, PCNT1

Location

Chromosome 17: 73,201,785-73,222,153 forward strand.

About this transcript

This transcript has 11 exons, is associated with 9873 variant alleles and maps to 289 oligo probes.

Gene

This transcript is a product of gene ENSG00000125450.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000447371.2	NUP85-201	2233	462aa	ENSP00000408261.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPW1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000245544.4	NUP85-001	2121	656aa	ENSP00000245544.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32730	B4DMQ3 F5H0W7 J3KSH3 J3QL54 Q9BW27	NM_024844.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579324.1	NUP85-002	2010	544aa	ENSP00000463382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0W7 J3QL54	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541827.1	NUP85-202	2010	610aa	ENSP00000441762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DMQ3 F5H0W7 J3QL54	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540768.1	NUP85-006	1926	259aa	ENSP00000445855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0W7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579298.1	NUP85-004	1890	611aa	ENSP00000462749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0W7 J3KSH3 J3KT10	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583070.1	NUP85-016	907	302aa	ENSP00000463542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000579557.1	NUP85-025	817	272aa	ENSP00000463496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLD4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000583877.1	NUP85-011	575	191aa	ENSP00000463715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLV0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000583569.1	NUP85-008	553	120aa	ENSP00000462487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSH3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579900.1	NUP85-024	528	114aa	ENSP00000463437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL91	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579838.1	NUP85-023	373	98aa	ENSP00000462364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581104.1	NUP85-005	2233	169aa	ENSP00000461919.1	Nonsense mediated decay		J3KRC0 J3KSH3	-	-
ENST00000578830.1	NUP85-012	922	100aa	ENSP00000462920.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580879.1	NUP85-018	583	19aa	ENSP00000463377.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578987.1	NUP85-021	388	46aa	ENSP00000464544.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584155.1	NUP85-022	300	18aa	ENSP00000464433.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000449421.2	NUP85-003	1287	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583948.1	NUP85-015	1197	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577208.1	NUP85-010	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581335.1	NUP85-017	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583548.1	NUP85-009	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582833.1	NUP85-007	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577645.1	NUP85-014	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582681.1	NUP85-019	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577561.1	NUP85-013	524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578294.1	NUP85-020	385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,197 bps,

Version

ENST00000583948.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446618 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000583948.1 NUP85-015

Summary