Transcript: ENST00000392695.2 TTC21B-003

Description

tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]

Gene Synonyms

ATD4, FLJ11457, IFT139, JBTS11, KIAA1992, NPHP12, THM1

Location

Chromosome 2: 166,713,988-166,747,151 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 14053 variant alleles and maps to 393 oligo probes.

Gene

This transcript is a product of gene ENSG00000123607.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000243344.7	TTC21B-001	5482	1316aa	ENSP00000243344.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33315	B3KU32 Q7Z4L5	NM_024753.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536175.1	TTC21B-201	1589	254aa	ENSP00000438692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z4L5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392695.2	TTC21B-003	1572	283aa	ENSP00000376460.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489714.1	TTC21B-005	647	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497425.1	TTC21B-009	617	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464374.1	TTC21B-006	1844	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486672.1	TTC21B-004	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476227.1	TTC21B-007	651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484129.1	TTC21B-008	484	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 6, Transcript length: 1,572 bps, Translation length: 283 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000392695.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000333772 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000392695.2 TTC21B-003

Summary