Transcript: ENST00000371872.4 SARDH-001

Description

sarcosine dehydrogenase [Source:HGNC Symbol;Acc:10536]

Gene Synonyms

BPR-2, DMGDHL1, SAR, SARD, SDH

Location

Chromosome 9: 136,528,682-136,605,042 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 21 domains and features, is associated with 37779 variant alleles and maps to 871 oligo probes.

Gene

This transcript is a product of gene ENSG00000123453.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371872.4	SARDH-001	3344	918aa	ENSP00000360938.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6978	B4DPI2 Q5SYV1 Q9UL12	NM_007101.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439388.1	SARDH-203	3216	918aa	ENSP00000403084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6978	B4DPI2 Q5SYV1 Q9UL12	NM_001134707.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422262.2	SARDH-202	2696	750aa	ENSP00000415537.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371868.1	SARDH-002	2266	368aa	ENSP00000360934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SYV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427237.2	SARDH-005	1957	608aa	ENSP00000394210.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SYV1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000298628.5	SARDH-201	1724	396aa	ENSP00000298628.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UL10	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371867.1	SARDH-004	1326	283aa	ENSP00000360933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SYU9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469828.1	SARDH-003	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 3,344 bps, Translation length: 918 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UL12

CCDS

This transcript is a member of the Human CCDS set: CCDS6978

Version

ENST00000371872.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054931 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000371872.4 SARDH-001

Summary